PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g083840.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 69aa    MW: 7839.01 Da    PI: 4.4611
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g083840.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.92.5e-161059149
                 NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk 49
                        lppGf+F Ptdeel+++yL +k++++k  + ++ + e+d++++ePw+Lp 
  Sopim06g083840.0.1 10 LPPGFKFCPTDEELICHYLYNKIANEKGLVLNFsLVEIDLHTCEPWQLPV 59
                        79**********************9995454555**************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-16860IPR003441NAC domain
PROSITE profilePS5100517.6521068IPR003441NAC domain
PfamPF023652.6E-81155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MDLRDVGATL PPGFKFCPTD EELICHYLYN KIANEKGLVL NFSLVEIDLH TCEPWQLPVI  60
DFRETSNK*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755187e-93HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242365.12e-36protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A3Q7H1Y95e-35A0A3Q7H1Y9_SOLLC; Uncharacterized protein
STRINGSolyc06g083840.2.11e-44(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1976633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.27e-20NAC domain containing protein 74