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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g083840.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 69aa MW: 7839.01 Da PI: 4.4611 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 51.9 | 2.5e-16 | 10 | 59 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk 49 lppGf+F Ptdeel+++yL +k++++k + ++ + e+d++++ePw+Lp Sopim06g083840.0.1 10 LPPGFKFCPTDEELICHYLYNKIANEKGLVLNFsLVEIDLHTCEPWQLPV 59 79**********************9995454555**************93 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.28E-16 | 8 | 60 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 17.652 | 10 | 68 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-8 | 11 | 55 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 69 aa Download sequence Send to blast |
MDLRDVGATL PPGFKFCPTD EELICHYLYN KIANEKGLVL NFSLVEIDLH TCEPWQLPVI 60 DFRETSNK* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 7e-93 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004242365.1 | 2e-36 | protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A3Q7H1Y9 | 5e-35 | A0A3Q7H1Y9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g083840.2.1 | 1e-44 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA19766 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.2 | 7e-20 | NAC domain containing protein 74 |