PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g083170.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 465aa    MW: 51160.4 Da    PI: 7.7223
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g083170.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.1e-09320367455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sopim06g083170.0.1 320 SHSLAERVRREKISQRMKLLQDLVPGC----NKVTGKALMLDEIINYVRSLQ 367
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.66E-10314371No hitNo description
SuperFamilySSF474591.57E-16314384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.408316366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-16316383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6320367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-10322372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDNDCFSNGG IQPPFHFDPK IPLNSLHSPH SDYFLNTHWD NNSTDNQYTH FDSALSSIVS  60
SPVPSNSVNS NSSLCELIGK LGSICTSPST PFTSNCDSTR TSCYTTPMSS PPKLHIPIMN  120
QIGKDKVPNL GNSVVMNSPP FPSLSAAKFS CFGSRSFNGR TSQFELNNED SRYGSGTGVM  180
GIGNLTRISS SPCVVQNKNS SLMMCERLNL GKISGRNEEC SVSEQDPNGE MGSKTRNVLN  240
SKKRKAVKSK DFVPIVDETG KKRAKSTQGN GSNNGTVKME EQKGNEDDGA EKETKENRKI  300
AEPPKDYIHV RARRGQATDS HSLAERVRRE KISQRMKLLQ DLVPGCNKVT GKALMLDEII  360
NYVRSLQHQV EFLSMKLASV NPRTDIHIDS LLHTEISQPS GSLHQHVFPV DGYAENLAQL  420
PTICEDDLQS IVQMGFNQNS NQDLILQSQT FPVPNSESQM KIKM*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001335304.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
TrEMBLA0A3Q7HYA00.0A0A3Q7HYA0_SOLLC; Uncharacterized protein
STRINGSolyc06g083170.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-69bHLH family protein