PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g082510.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 468aa    MW: 52597.8 Da    PI: 8.7709
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g082510.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.7e-12418465347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         +W+  E+e l  +v+q+G g+Wk I +t +     Rt+ ++k++w+++
  Sopim06g082510.0.1 418 KWSSLEEETLRAGVQQYGIGNWKFILNTYPnifSARTAVDLKDKWRNL 465
                         8********************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.486411467IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-11413466IPR009057Homeodomain-like
SuperFamilySSF466891.01E-14413466IPR009057Homeodomain-like
SMARTSM007170.0097415467IPR001005SANT/Myb domain
PfamPF002493.9E-8418465IPR001005SANT/Myb domain
CDDcd116601.10E-18418466No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDIDTDISHW ILEFILRQPL DDSVLNGFIH VLPLPNDKPN LKKALLIRKI ESEISNGSVN  60
EKILDFLELI EELNHQDGIE ASEVMKAAYC AVAVECTVKF LNSEGTGGDK GKYFDAVRRI  120
WKRKINLTEK IENVGFVSEE LWNWRDEIEA ALWDDKCSYS VIMKSKAVVA VESVKFFVRE  180
AKERTGSPFL DVVAEAYQSD ETMKTLFGGL NKEGARRENN REVSKGTALR RKKHVAFKRT  240
REGVRINDSI ELELKASGGG GQDGLPSSAE IQKAEKALKL SSLELRAMVK DPLPEALRYA  300
ETLSHLARDN MGHQPAGNRS DRAPPPMYSS SRLFQASGDK CEAQHNFHQS AASKPDQVNQ  360
NTTANPIELD DFLDKLTEGS PSPSKANRAT LPTPKTVRVS PLKKYEYKKI TTRRKVTKWS  420
SLEEETLRAG VQQYGIGNWK FILNTYPNIF SARTAVDLKD KWRNLIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117123RRIWKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2267260.0AC226726.1 Solanum lycopersicum chromosome 6 clone C06HBa0057D21, complete sequence.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242481.10.0uncharacterized protein LOC101245372
TrEMBLA0A3Q7HXX20.0A0A3Q7HXX2_SOLLC; Uncharacterized protein
STRINGSolyc06g082510.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-16TRF-like 5