PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sopim06g075780.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 155aa MW: 17637.4 Da PI: 9.8421

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim06g075780.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cg+ Fs L H+r+H Sopim06g075780.0.1 77 HECLICGMEFSMGQALGGHMRRH 99 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.67E-7	33	99	No hit	No description
PROSITE profile	PS50157	9.39	34	56	IPR007087	Zinc finger, C2H2
Pfam	PF13912	7.8E-11	34	58	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.47	34	56	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	36	56	IPR007087	Zinc finger, C2H2
Pfam	PF13912	5.3E-10	76	101	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.12	77	104	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.28	77	99	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	79	99	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MIKIREDKGE VEAQAMANCL MLLSSIDRDR RNSFECKTCK RRFSSFQALG GHRTSHKSTI 60 DIGKFLHGKI SKKRKVHECL ICGMEFSMGQ ALGGHMRRHR APVNEIEHSA KRIPVLKKSN 120 SNERIFCVDL NLTPDENDDF HFWPMPPVPP FLSS*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025887528.1	1e-111	LOW QUALITY PROTEIN: zinc finger protein ZAT1
TrEMBL	A0A3Q7H3L6	1e-107	A0A3Q7H3L6_SOLLC; Uncharacterized protein
STRING	Solyc06g075780.1.1	1e-111	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA366	24	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59820.1	2e-33	C2H2 family protein