PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g074160.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 255aa MW: 29496.7 Da PI: 5.5042 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.7 | 6.8e-16 | 23 | 103 | 13 | 97 |
TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 l +p +f+++ g ++ s l +e + rsW+v + +k + +++++GW +Fv++n+L+ D + F + g+s+f vk++ Sopim06g074160.0.1 23 YLKLKIPSRFFKNLnGDIPVIS-LLEVEGSARRSWRVVI--EKIEEDFYFKGGWTKFVQDNNLENEDYLNFLYAGNSTF--SVKIY 103 44589******77687777776.999999999*******..**********************************9999..77776 PP | |||||||
2 | B3 | 56.8 | 4.1e-18 | 157 | 249 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 + ++++++++ +l +p +f +++ g+ + ++ +++g+sW v + ++s+r l+kGW+++ ++n+L +gD++ Fkl+++++f Sopim06g074160.0.1 157 EIVMKKSNFSNMLLNFPSTFGKKYmkrGQ--VFE-KMATLQTDGKSWPVVV---RSSDRLKLRKGWRQYLQDNDLHVGDVLRFKLIDEENF 241 5677999*****************76333..344.5666677*********...8999*****************************9*** PP ..EEEEE- CS B3 91 elvvkvfr 98 l+v ++r Sopim06g074160.0.1 242 ILKVLIRR 249 99999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.65E-19 | 8 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.18E-11 | 11 | 103 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-18 | 11 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.4E-12 | 13 | 106 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.4E-14 | 25 | 103 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.575 | 26 | 106 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.77E-16 | 154 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.605 | 155 | 251 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.58E-15 | 155 | 249 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 8.9E-17 | 155 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.6E-11 | 156 | 251 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.3E-16 | 157 | 249 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MERNYVGNGF PAFIKVYSPE TCYLKLKIPS RFFKNLNGDI PVISLLEVEG SARRSWRVVI 60 EKIEEDFYFK GGWTKFVQDN NLENEDYLNF LYAGNSTFSV KIYGTNGYLK QELNAIAELE 120 LHPLDEENPN EIQVVSPLAD EELDGSENSL VSVTLFEIVM KKSNFSNMLL NFPSTFGKKY 180 MKRGQVFEKM ATLQTDGKSW PVVVRSSDRL KLRKGWRQYL QDNDLHVGDV LRFKLIDEEN 240 FILKVLIRRI TFDC* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 1e-175 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004242112.1 | 0.0 | B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A3Q7GZQ7 | 0.0 | A0A3Q7GZQ7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g074160.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12633 | 13 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06160.2 | 3e-13 | B3 family protein |