PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g073980.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 185aa    MW: 21098.5 Da    PI: 8.8778
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g073980.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.93.1e-1291182499
                         E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                         + +++++l+++rl lp +f + + + k+++ + tl++ ++ sW++     ++ +r  l++G ++F ++n L+++D++ Fkl+++++  l+v
  Sopim06g073980.0.1  91 IVIKASHLNRARLNLPAPFGNCYLKRKKRPLMATLRT-DSGSWTIVP---QYYDRLELREGIQKFIDDNALRVNDVCRFKLIDDEKLILKV 177
                         567899999***********88866667887777666.7779***99...3445677*************************999998888 PP

                         EEE-S CS
                  B3  95 kvfrk 99 
                         ++ r+
  Sopim06g073980.0.1 178 RIKRQ 182
                         88775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-1285181IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-1185177IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.81188183IPR003340B3 DNA binding domain
CDDcd100171.16E-888181No hitNo description
SMARTSM010197.3E-889183IPR003340B3 DNA binding domain
PfamPF023621.7E-991182IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MVTPVEHVSI PHDLPEFFKI FHPEICYPQL FYVKIYGKNG CLKEDVTALK EPELLPLVEE  60
KARGKSIVAE PADQTDNGSG DMASSVTSFE IVIKASHLNR ARLNLPAPFG NCYLKRKKRP  120
LMATLRTDSG SWTIVPQYYD RLELREGIQK FIDDNALRVN DVCRFKLIDD EKLILKVRIK  180
RQPK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113119LKRKKRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-135HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010322448.11e-135uncharacterized protein LOC101259943 isoform X2
TrEMBLM1A5L91e-105M1A5L9_SOLTU; Uncharacterized protein
STRINGSolyc06g073980.2.11e-134(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126331320