PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g073920.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | YABBY | ||||||||
Protein Properties | Length: 193aa MW: 21347.1 Da PI: 8.6049 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 232 | 1.4e-71 | 9 | 165 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 ssse+vCyv+CnfC+tilavsvP +s++++vtvrCGhC++llsvn+a + q l+ ++ l+++ + ++ + + + + ++++s+++ Sopim06g073920.0.1 9 SSSSERVCYVHCNFCSTILAVSVPCNSMMTIVTVRCGHCANLLSVNIAPSLQSLPIQD-LQRQNESSIEDGM------SRGYGSSSSSTNS 92 5799****************************************************99.5554444443333......2333444444444 PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ + +++ d++ pr pp ir PekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Sopim06g073920.0.1 93 FHRFSPIPT--DHDQPRSPP-IRVPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 165 455555555..556688888.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 9.1E-73 | 11 | 165 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.83E-8 | 104 | 158 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.2E-5 | 112 | 159 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MSLDMTYSSS SSERVCYVHC NFCSTILAVS VPCNSMMTIV TVRCGHCANL LSVNIAPSLQ 60 SLPIQDLQRQ NESSIEDGMS RGYGSSSSST NSFHRFSPIP TDHDQPRSPP IRVPEKRQRV 120 PSAYNRFIKE EIQRIKASNP DISHREAFST AAKNWAHFPH IHFGLKLDGN KQTNKLDHAV 180 AGEGPQKTIG LY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ667767 | 0.0 | KJ667767.1 Solanum virginianum YAB2 protein mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001353825.1 | 1e-143 | putative axial regulator YABBY 2a | ||||
Swissprot | Q9XFB0 | 4e-77 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A3Q7GZK7 | 1e-142 | A0A3Q7GZK7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g073920.2.1 | 1e-143 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 3e-74 | YABBY family protein |
Publications ? help Back to Top | |||
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