PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g072750.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 483aa    MW: 54336 Da    PI: 5.1769
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g072750.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.1e-35221142103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++++ ++sws+++nsfvv++  ef+++vLpkyFkh+nf+SFvRQLn+Yg+kkv+ +          weF+++ F +g+k+
  Sopim06g072750.0.1  22 FLSKTYDMVDDRSTDAVVSWSKSNNSFVVWNVPEFSRDVLPKYFKHNNFSSFVRQLNIYGYKKVDPDC---------WEFANEGFLRGQKH 103
                         9***************************************************************9987.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i r+k +
  Sopim06g072750.0.1 104 LLKTISRRKPS 114
                         ********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3716106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.35E-3417111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-5918111IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.9E-3122111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-182245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-186072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-187385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MSPDGEKTKG GVHEIGNSVP PFLSKTYDMV DDRSTDAVVS WSKSNNSFVV WNVPEFSRDV  60
LPKYFKHNNF SSFVRQLNIY GYKKVDPDCW EFANEGFLRG QKHLLKTISR RKPSQMQVHQ  120
ETASQVQSLS VGSCVEVGKI GIEEEVERLK IDKSIHMEEL VSLRQQQKAT DHRLENVGQR  180
LQLMEQREQQ AMTFLAKALQ SPGFIAELVH QQNEGKRRIP GMNKKRRFPN QEEENYAAKQ  240
VSTLRDRQIV RYQPLMNEAA KALLQKLLKT NTSGRLETIV KNTHGFLTNR ARSFENTLET  300
GGISPHISEV TLSQLATSSQ SHLMSDSGFP FNSSLSVIPE IQYSPSLVPG QAKVPQFPEL  360
NALYSKTDNV NPEFSGHGFN TPETHEITNL KRPETGDMPY IETMQDIVDD VTSIIPDGFS  420
MDDVFSDEMP KLPGINDTFW DQILLASPLT GDKDEIGSLA LDDGLSKEED VPEVQESDCD  480
KL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-251711124129Heat shock factor protein 1
5d5v_B1e-251711124129Heat shock factor protein 1
5d5v_D1e-251711124129Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2110390.0AC211039.2 Solanum lycopersicum chromosome 6 clone C06HBa0084A18, complete sequence.
GenBankAC2192270.0AC219227.1 Solanum lycopersicum chromosome 6 clone C06SLm0113N10, complete sequence.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242136.10.0heat stress transcription factor A-1b-like
TrEMBLA0A3Q7H2A90.0A0A3Q7H2A9_SOLLC; Uncharacterized protein
STRINGSolyc06g072750.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50542137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-102heat shock factor 3