PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g072520.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 290aa    MW: 32474.4 Da    PI: 7.4163
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g072520.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09135182455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Sopim06g072520.0.1 135 SHSLAERVRREKISERMKILQALVPGC----DKVTGKALMLDEIINYVQSLQ 182
                         8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-17129199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.60E-11129186No hitNo description
Gene3DG3DSA:4.10.280.101.1E-16131199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6135182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEANSNSFHV DSVFHVPIKM SGFFEEPNNN ITSSSTLPNC VSQFYLQELS VNMSNNVHEI  60
SHNEPSHVTN KTNSSSLCST QSKNVRDGDD GKGQKKRNGN VKREKKTKEN KKKAPEEAPT  120
GYVHVRARRG QATDSHSLAE RVRREKISER MKILQALVPG CDKVTGKALM LDEIINYVQS  180
LQNQVEFLSM KLASLNPMYY DFGMDLDALM VKPDQSWSGL EGPLLENTTS NYPHLDSSTS  240
LMFQQLHLPN SVSQGSGHVL WSVDDQRQKM IINHSELISN NNNLSVPFH*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-136HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010322508.10.0transcription factor bHLH137-like
TrEMBLA0A3Q7H2630.0A0A3Q7H263_SOLLC; Uncharacterized protein
STRINGSolyc06g072520.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-53bHLH family protein