PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g071860.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 606aa    MW: 67030.7 Da    PI: 4.6624
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g071860.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.52e-12259281426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         + C ++++tGtC+yG +CkF+H+
  Sopim06g071860.0.1 259 VDCAYYMKTGTCQYGLNCKFNHP 281
                         68********************8 PP
2zf-CCCH28.62.4e-09308330527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                         +C++++  G CkyG+ Ck++H++
  Sopim06g071860.0.1 308 ECKYYLTEGGCKYGNACKYSHSK 330
                         6********************95 PP
3zf-CCCH40.16e-13351375226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C+f++rtG CkyG++C+F+H+
  Sopim06g071860.0.1 351 GEKDCPFYMRTGSCKYGSSCRFHHP 375
                         6789********************9 PP
4zf-CCCH24.74.1e-08487513127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C++f +tG Cky + CkF+H++
  Sopim06g071860.0.1 487 PGQPDCSYFIKTGDCKYKSYCKFHHPK 513
                         5789*********************96 PP
5zf-CCCH37.93.1e-12535560227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ C+f++r+G+CkyG+ CkF H++
  Sopim06g071860.0.1 535 GQAVCSFYSRYGICKYGPACKFDHPE 560
                         7899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.76255283IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5255282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6257284IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-10259281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4261280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.497303331IPR000571Zinc finger, CCCH-type
SMARTSM003560.0019303330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5308331IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-7308330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-5309330IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-7349376IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.37349377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6351377IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10351375IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5355374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.634486514IPR000571Zinc finger, CCCH-type
SMARTSM003560.0076486513IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4488513IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-5531558IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7533560IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112533561IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9535560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4538561IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MEAIQSPYMH NLSQPTLDKQ YLGFDPQPPD TASFSSEPNF QNPSRDLPEV EEDEFDDDDE  60
IALQIIFKEV QNLVLNQAFS EARAKGGVYE SAMVKSGSED EKDVRMIGEE LQNLVVDQAF  120
SEERAKGDIN EGNGREEVGN EYGGNRYEDG AGWSENVNVI DVKNEKGGEV ISREWGFDND  180
EDGDYSWSES GIVVDVENEK AGDAGSKEWG FDDYEDGDLS WTGNEIDVVN ESGSMAGSKE  240
WGFNANGRRL SYPLRPDAVD CAYYMKTGTC QYGLNCKFNH PSRRQNQQWA MEKGKQKDES  300
EERAGLIECK YYLTEGGCKY GNACKYSHSK GKGAISPVLD FNFLGLPIRQ GEKDCPFYMR  360
TGSCKYGSSC RFHHPDPSTV TGNNPSLGYN NGGSAPVQSA SYSPVSSWSS PRASNETSPF  420
VPVVYSANQG ILPLSPEWNR FQAPVYPTSE KSLPTPPAFT VKDPATKTNI YSRPQPPWLV  480
EEYPERPGQP DCSYFIKTGD CKYKSYCKFH HPKTQKSLTN PPSVLNDKGL PLRPGQAVCS  540
FYSRYGICKY GPACKFDHPE HIDNAPASSP RPAFYQPPFG ISSASDGLRM ARKGNGSGSL  600
VHQSV*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260200.0AC226020.1 Solanum lycopersicum chromosome 6 clone C06SLm0127C05, complete sequence.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010322521.10.0zinc finger CCCH domain-containing protein 67 isoform X1
SwissprotQ9STM41e-105C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A3Q7H1P50.0A0A3Q7H1P5_SOLLC; Uncharacterized protein
STRINGSolyc06g071860.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-101C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]