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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim06g070990.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 650aa MW: 71671.1 Da PI: 6.5112 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim06g070990.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 95.9 | 2.7e-30 | 278 | 337 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+
Sopim06g070990.0.1 278 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApNCPVRKQVQRCAEDMSILITTYEGTHNHT 337
58***************************99****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 650 aa
Download sequence Send
to blast |
MENKNKAEYY SPDDEDRDID NQENIIHQFG KGRKEREDDK SKPSSPHHKD YMNIDNIEGG 60 AVNVMVKRER SPPEHNSMAS SSTHKEQDDQ LASAKDEMRE VMEENQRLRM HLDRMMKEYR 120 NLQNQFHDIV QKETDQKSSS TTVNTSTTHH DHESDQEADQ LVSLSLGRTT SDMKKDDLSK 180 ILKKDKVHDD EGVSNNNKSL DLGLDCKFET TPTECSPVNY SPENSLDDIQ ANKDENEETS 240 NKNLKTMRNN GDGDDVSQQN PTKRARVSVR VRCDAPTMND GCQWRKYGQK IAKGNPCPRA 300 YYRCTVAPNC PVRKQVQRCA EDMSILITTY EGTHNHTLPL SATAMASTTS AAASMLLSGS 360 SNSSDPNPQV TATTTTTPTT TTSANINGLN FYLSDTSKHH KSPYYFPNSS ISASAPNSLP 420 TITLDLTSTS SSSPSSLSHL NRMTQNFPPR YNYNNNNSTT NLNFSSVLES NSLPISWTNN 480 YPNQTYNKNN QNFGPLTFSS RSSQDNIFQS YLQKNTTQSS LPPDTIAAAT KAITSDPNFH 540 SALAAALTSI IGNSPIENKS VHNLNVTEPF PILSSLPSSS NPNKCSSSFL NKPTSSASAN 600 NNNNSNTNSN STQQPGNNSM VFFGQSSSSL PFSTSNKGKS TSPGDSKFD*
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Functional Description ? help
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Source |
Description |
UniProt | In association with WRKY72A, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | GU017422 | 0.0 | GU017422.1 Solanum lycopersicum WRKY72-like protein mRNA, complete cds. |