![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim06g069710.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 340aa MW: 38049.3 Da PI: 8.049 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.2 | 4.5e-55 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL +kv ++++ + +i +vd++kvePwdLp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkd+e Sopim06g069710.0.1 16 LPPGFRFHPTDEELITHYLSNKVVDTNFVA-IAIGDVDLNKVEPWDLPWKAKMGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDRE 105 79*************************988.78***************888999************************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ +++lvg+kktLvfykgrapkgekt+Wv+he+rle Sopim06g069710.0.1 106 IFR-GKSLVGMKKTLVFYKGRAPKGEKTNWVIHEFRLE 142 ***.999****************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-62 | 13 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.486 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.5E-28 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 340 aa Download sequence Send to blast |
MENYSGVVKD DDQMELPPGF RFHPTDEELI THYLSNKVVD TNFVAIAIGD VDLNKVEPWD 60 LPWKAKMGEK EWYFFCVRDK KYPTGLRTNR ATAAGYWKAT GKDREIFRGK SLVGMKKTLV 120 FYKGRAPKGE KTNWVIHEFR LEGKLSLQNL PKTAKNEWVI CRVFQKSSGG KKIHISGLLK 180 LNSNENEMGN SFLPPLTDSA TATASKSSHV HCFSNFLTAQ NNCFPLLSNP MDSYPTTSLV 240 PNTFSCNQIA PFTTTNNPAS FGVQDPSILL RTSLDSYGLN FKKEDIFNVP QETGVISTDM 300 NTDITSVVSN LEMKRRFLED QVPSAGMVGL QGLDCLWSC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-53 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-53 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-53 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-53 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-53 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-53 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-53 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-53 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-53 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-53 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-53 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-53 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-53 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-53 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004241586.1 | 0.0 | NAC domain-containing protein 100 | ||||
Swissprot | Q9FLJ2 | 1e-125 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A3Q7GYH5 | 0.0 | A0A3Q7GYH5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g069710.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-123 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
---|---|---|---|
|