PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g069370.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 550aa    MW: 60440.8 Da    PI: 7.9988
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g069370.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.91.6e-17254303255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h++ E+rRR++iN++f +Lre++P++    ++K +Ka+ L +++eYI+ Lq
  Sopim06g069370.0.1 254 RSKHSATEQRRRSKINDRFLKLREIIPHS----DQKRDKASFLLEVIEYIQFLQ 303
                         889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.8E-23249320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-19250323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.71252302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-14254307No hitNo description
PfamPF000108.0E-15254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-13258308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MELPQSRPFG TEGRKTTHDF LSLYSPIEQD PRPSQGGHLQ THDFFQPLEQ ARKTVGKEEN  60
KVEVEAIEKQ PPSAAHILPG GIGTYSISYS QQRFPKPEAN TFAVTQTSST DRDDRNSNCS  120
SYSGSGFALW NESAMKKGKT GKENLAGDRH VVREAGLNIG GGKCTTSLER QSQLSSNHNH  180
NTATLSSHSS PQQPSAMENH SFIHMITSAK NAQEDDDDDE EEFVVKKESP SPSRGNLSVK  240
VDGKSSDQKP NTPRSKHSAT EQRRRSKIND RFLKLREIIP HSDQKRDKAS FLLEVIEYIQ  300
FLQEKVHKYE GSYQSLDSQP STLPWNKCHS MAQGFIDHSQ GTNSASSPAL IRAAKFDENK  360
IGISATGPVT EQTQEPNRTS SVKESSFLSE LTNRAATLCM QPSTFPFGGH TSIASLKSIL  420
APDAGSLELK SQPQCPSNRL NMANYAVTND KLKGQEVSTE SGTLSISSVY SQRLMNTLKQ  480
ALQSSGVDLS QANMSVQIDL AKRADDRSNA STSNFKGDNI SSRNQPTPLF IDTSTREESV  540
HAFKRLKTS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241615.10.0transcription factor BIM1 isoform X3
TrEMBLA0A1S4BWU10.0A0A1S4BWU1_TOBAC; transcription factor BIM1-like isoform X1
TrEMBLA0A1U7XMJ40.0A0A1U7XMJ4_NICSY; transcription factor BIM1-like isoform X1
STRINGSolyc06g069370.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-92bHLH family protein