PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g069240.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 407aa MW: 45628.9 Da PI: 8.6476 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.1 | 1.3e-37 | 114 | 277 | 3 | 134 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........................s 66 kdrhski T++g+RdRR+Rls++ a++fF Lqd LGfdk+skt+eWLl+q+ ai el+ s Sopim06g069240.0.1 114 SNKDRHSKINTARGPRDRRMRLSLDAARKFFRLQDLLGFDKASKTVEWLLTQSDSAIEELVAAkgndaqvaqqtscntpttttgigaicaS 204 579************************************************************99*****999999999999999888774 PP TCP 67 sssasec.....eaesssssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 +s +++c ++e+ss+ ++++++++++k++ k+ ++++ a l kesr++arararert++k++ ++ Sopim06g069240.0.1 205 NSISESCevisgTDETSSNDKNKETAQDEEKKKRKKVVNTARRAVLEPLTKESRNQARARARERTKSKKMSQT 277 44445677775333333333333444466666668889999999999****************9998877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.0E-44 | 114 | 275 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.024 | 115 | 173 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.49 | 255 | 272 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MYPPSNNNCS PILSSLICQN IPSSPCMQYE HELYFQSFNH DNQYYFQQQQ LVPSIDDLSP 60 HILADSCTEI ITKPSNCNHE LQGMEEGRGE KKGDDDVMSS RISGRISKNN KRSSNKDRHS 120 KINTARGPRD RRMRLSLDAA RKFFRLQDLL GFDKASKTVE WLLTQSDSAI EELVAAKGND 180 AQVAQQTSCN TPTTTTGIGA ICASNSISES CEVISGTDET SSNDKNKETA QDEEKKKRKK 240 VVNTARRAVL EPLTKESRNQ ARARARERTK SKKMSQTGKS KSLANDLNPS GSRRPANKTC 300 EEPGTHEELN FHQEKNTVDD CNFMVNGNWN PFTIFSYHEQ YAGISNETCN FVESYGKARA 360 RNFEADKVPS SFCAGNSKRI KFLLHFVLTR PQQKNVSGLY LLVNVT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 235 | 239 | KKRKK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ496326 | 0.0 | GQ496326.1 Solanum lycopersicum TCP transcription factor 8 (TCP8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234572.2 | 0.0 | TCP transcription factor BRC1b | ||||
TrEMBL | A0A3Q7HTP5 | 0.0 | A0A3Q7HTP5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g069240.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2482 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 5e-26 | TCP family protein |