PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim06g068200.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 689aa MW: 79240.7 Da PI: 6.6797 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.9 | 6.1e-22 | 182 | 263 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn YAk GF vr+s++ ++ +++e ++ ++ Cs+ g++++++ + r+r+etrtgC a++k +++++++w+++++eleHnH + Sopim06g068200.0.1 182 FYNCYAKAYGFGVRVSNTWYR-KSRERYRGKLSCSNAGFKKKSEAN-----RPRPETRTGCPAMIKFRLTENKRWRIIEVELEHNHLI 263 9***************99997.66679**************99888.....***********************************76 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.5E-19 | 182 | 263 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.2E-23 | 388 | 473 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.085 | 596 | 637 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 689 aa Download sequence Send to blast |
MAAIYSSFLQ PYGFLIHQAN IEVESLTSVS RISYIVKYNS KSCKGELPSE NILISWIERH 60 ITILCSNYIP NSTKPVIRST VGGEIHLEFF SLLTSLSKID VFALCFTFFF FSQLDVDASA 120 TLQMDGLSLN ASIFEDETEE FDIDGECAMT EYAGHSGVLE GENPVHPNIG MEFETYEDVY 180 YFYNCYAKAY GFGVRVSNTW YRKSRERYRG KLSCSNAGFK KKSEANRPRP ETRTGCPAMI 240 KFRLTENKRW RIIEVELEHN HLIHPSTEKF YKSHRNNSSG RKRPLQMTGN QENHKIRLFR 300 TVIIDPDDDG EFRNMIDQSN NHLILKPGDA QAILSFFTDL QLVNPDFFYV MDLNEKGCPR 360 NVFWAEARCK ATYGYFGDVV KIATACLISK YEVPLVVFAG VNHHGQSVPL GCGLVAGETV 420 ESFIWLLRAW LTYMIGRPPQ TVIIDQSSAM QTAIADVLPR ASHCISLSHI MKKVLEELAW 480 EDMMLYHGIR DHKWLQTLHE NRKHWVPVYL KDTFLAGMFG VTLEEREVSS PFDEYLSDHT 540 PLKEFLDGYN QCLKEIYQRE ALADSESRNP SCMLKSRIYF EMQLSKIYTN PIFVKFQIEI 600 EGMFSCLTVA DVLCECGLFN LKGFLCRHTS CVLSQNGFKE IPPQYILSRW RMDIHRSYVL 660 DYGCNFINTK NPVHRYDNLY KCAVKLVE* |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016439116.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | A0A314LFP0 | 0.0 | A0A314LFP0_NICAT; Protein far1-related sequence 6 | ||||
STRING | Solyc06g068200.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1347 | 19 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-150 | FAR1-related sequence 6 |