PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g064580.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 305aa    MW: 34448.8 Da    PI: 5.7208
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g064580.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.8e-14118165355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h  +Er+RR+r  + f+ L + +P++     kKl+Ka+iLe A++YI +Lq
  Sopim06g064580.0.1 118 QDHLLAERKRRERFSQLFALLAKAIPQL-----KKLDKASILEDAIKYIGELQ 165
                         668899**********************.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.818115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11118165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-14119182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-11120169No hitNo description
SuperFamilySSF474592.22E-15120180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-13121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MENTTFNNNI IGDEEAPFEF KNLLSEMFTS LPNQNPTTSN SLENVPKIAF SCSSPSSNNS  60
SSSSQNIISF GNKADSFFLE DNELDYDMIT EKVIMSNVNI SNSSMASKRI CRSPLQSQDH  120
LLAERKRRER FSQLFALLAK AIPQLKKLDK ASILEDAIKY IGELQERVSS LEEAARTIKS  180
STNLIESTHP TLVHKQYSHD DHVDDLESKR HENINDIKVQ ILDKNVLIGI HCNKQMRSIF  240
SIIAGIMEKL HLTIHHIRVS PSNHTSLHYI SILAEIDENV DIKVQDVEKA FELHLLTIQD  300
STQE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128ERKRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025887517.10.0transcription factor bHLH18-like
TrEMBLA0A3Q7GYH20.0A0A3Q7GYH2_SOLLC; Uncharacterized protein
STRINGSolyc06g064580.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125981122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.21e-25bHLH family protein