PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g062460.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 392aa    MW: 43275.2 Da    PI: 6.1774
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g062460.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.42.3e-07293335754
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++ rrRR++i +++  L++l+P         ++ a++L +A +Y+k L
  Sopim06g062460.0.1 293 AAARRRREKISERIRILQKLVPGG-----SNMDTASMLDEAANYLKFL 335
                         567*******************95.....48***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.38286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-13291344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-12292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-11292342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.72E-10292339No hitNo description
PfamPF000101.2E-4294335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MNFQEFGAAF DPIDILSSWN ISQRQEAATR LAADSVAAKS GAGSIGDCSK RKIDSSSSNF  60
PPGNNYLPYF GNNQVPVCSL MADLSSISLF SKTKSPNCLL SATNTSNTDT SGELDDVIFS  120
DDSESLWNIH TSNVVSSGES AIDAYKSKPI DADDNNDIHY SVNQLHATVS CNNLIRSSEA  180
KYYNMDKRSH DALLESDSSN RDYVIQLISE NDQPKSKKSR SEYKLPSSSN INFQQASSSA  240
CSIVDRDSEA IAQMKEMIYR AAAFRPVSSV TEDVMVEKPK RKNVRISMDP QTAAARRRRE  300
KISERIRILQ KLVPGGSNMD TASMLDEAAN YLKFLRTQVN AFESFGFNID PSITNNNFTT  360
SLSSIPLINY PFPLQPHFPM QNLNPVHHPK C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279298KRKNVRISMDPQTAAARRRR
2295300RRRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241947.10.0transcription factor bHLH87-like
TrEMBLA0A3Q7HR530.0A0A3Q7HR53_SOLLC; Uncharacterized protein
STRINGSolyc06g062460.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43502242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.15e-54bHLH family protein