PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g061160.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 200aa    MW: 22536.7 Da    PI: 5.6232
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g061160.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.1e-053355123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C + F++   L  H+++H
  Sopim06g061160.0.1 33 YTCTFCRREFRSAQALGGHMNVH 55
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.74E-63060No hitNo description
PfamPF139121.8E-53357IPR007087Zinc finger, C2H2
SMARTSM003550.00663355IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0113360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MWNPKDDDDS WEVRAFEEDT GNSMGATWPP RFYTCTFCRR EFRSAQALGG HMNVHRSDRV  60
RLNQTPSHAS NSSTINFPNA NSTLLIQNQE FIQNGGLCFL YSMPNYYYNN PNPTTINKSS  120
NVDPSNLLSN ISPFLTNNLM SPCTIPSSNF QPHNISSSSF NTSEPSASNS TSNDNNRDKR  180
IEDEIDLELR LGWRSAIPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-122855229superman protein
2l1o_A1e-122855229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242274.11e-145zinc finger protein 10-like
TrEMBLA0A3Q7GVB31e-144A0A3Q7GVB3_SOLLC; Uncharacterized protein
STRINGSolyc06g061160.1.11e-145(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.16e-33C2H2 family protein