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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim06g059780.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
M-type_MADS |
Protein Properties |
Length: 181aa MW: 21057.6 Da PI: 6.3716 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim06g059780.0.1 | genome | CSHL | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 34.5 | 2.6e-11 | 15 | 63 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
k+ienk +f+kRr+g+ KA+EL + ++++ ++++sstgk + +
Sopim06g059780.0.1 15 KKIENKDSMFASFTKRREGLYRKASELATEYNVDIGIMMISSTGKPHSF 63
68******************************************98877 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 181 aa
Download sequence Send
to blast |
MERKKTKGRQ KIPMKKIENK DSMFASFTKR REGLYRKASE LATEYNVDIG IMMISSTGKP 60 HSFFHPTFDA VISRFQNPDM QFGESTNLEA NAARNEVNQL KTKLEELDVR EDIAIAKKNS 120 YEQMEETRQK DWWESTEQLN ADQVFIFETW LNETSSNLHH RLNQLEIEAS SSMRHESFGV 180 *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |