PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g051260.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 226aa    MW: 25553.3 Da    PI: 8.92
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g051260.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.3e-155299355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        r+h+e+E+rRRdriN  +++Lr+l+P++     +K++Ka  L+ +ve++k+L+
  Sopim06g051260.0.1 52 RSHSEAEKRRRDRINAQLSTLRKLIPTS-----EKMDKAGLLRSVVEHVKDLE 99
                        78*************************9.....8****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.594998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-1652102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-135299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-1452110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-105299No hitNo description
SMARTSM003531.4E-1355104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.53E-5136172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MLRSIQLREM MDDSSCSKYT HETLSSWCHN LQELPLIPTN SCCWSQQFSA SRSHSEAEKR  60
RRDRINAQLS TLRKLIPTSE KMDKAGLLRS VVEHVKDLEG KAKEMSNVLN TPSDIDEVVI  120
EEEDESSNNN NIVVKVSFSC DDRPELFSEL NRGLKNLKLT TMEAKITSLG GRIKCILSLQ  180
SINVVCTTHS IKHSLRLLLA RIATSPSTSN FRIKSKRQRF FLLAT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213218KSKRQR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240923.11e-164transcription factor bHLH51
TrEMBLA0A3Q7GVN01e-156A0A3Q7GVN0_SOLLC; Uncharacterized protein
STRINGSolyc06g051260.2.11e-164(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58202235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-30bHLH family protein