PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g050840.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 160aa MW: 17852.1 Da PI: 4.7325 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.4 | 0.00058 | 4 | 44 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 rE++R + + ++++ Lr++ + a ls ++i A +YI++L Sopim06g050840.0.1 4 REQKRASVLHDKLQLLRSITKShA-------LSESSIIVDASKYIQEL 44 8******************98855.......***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-6 | 3 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.0E-6 | 4 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 1.46E-4 | 84 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MVSREQKRAS VLHDKLQLLR SITKSHALSE SSIIVDASKY IQELKHKVER LNQDITTTTP 60 QTNSNNNTSS WPQIEVETLE KGFLVNVYSE RSCPGLLVSI LQVLEDLGLN VLEARVSCTD 120 TFRLQAFGGE DEETMINAQV VTEAVFEAIK NWSESKEQG* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC219225 | 2e-92 | AC219225.1 Solanum lycopersicum chromosome 6 clone C06SLm0082G10, complete sequence. | |||
GenBank | HG975445 | 2e-92 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 2e-92 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004240904.1 | 1e-114 | transcription factor bHLH61 | ||||
Refseq | XP_015077805.1 | 1e-114 | transcription factor bHLH61-like | ||||
TrEMBL | A0A0V0H5W5 | 1e-104 | A0A0V0H5W5_SOLCH; Putative transcription factor bHLH61-like | ||||
TrEMBL | M1CPH7 | 1e-104 | M1CPH7_SOLTU; Uncharacterized protein | ||||
STRING | Solyc06g050840.2.1 | 1e-113 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2945 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10570.1 | 3e-09 | bHLH family protein |