PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g050840.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 160aa    MW: 17852.1 Da    PI: 4.7325
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g050840.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.00058444854
                        HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        rE++R + + ++++ Lr++  + a       ls ++i   A +YI++L
  Sopim06g050840.0.1  4 REQKRASVLHDKLQLLRSITKShA-------LSESSIIVDASKYIQEL 44
                        8******************98855.......***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-6364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-6463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.46E-484138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MVSREQKRAS VLHDKLQLLR SITKSHALSE SSIIVDASKY IQELKHKVER LNQDITTTTP  60
QTNSNNNTSS WPQIEVETLE KGFLVNVYSE RSCPGLLVSI LQVLEDLGLN VLEARVSCTD  120
TFRLQAFGGE DEETMINAQV VTEAVFEAIK NWSESKEQG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2192252e-92AC219225.1 Solanum lycopersicum chromosome 6 clone C06SLm0082G10, complete sequence.
GenBankHG9754452e-92HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755182e-92HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240904.11e-114transcription factor bHLH61
RefseqXP_015077805.11e-114transcription factor bHLH61-like
TrEMBLA0A0V0H5W51e-104A0A0V0H5W5_SOLCH; Putative transcription factor bHLH61-like
TrEMBLM1CPH71e-104M1CPH7_SOLTU; Uncharacterized protein
STRINGSolyc06g050840.2.11e-113(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2945911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.13e-09bHLH family protein