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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sopim06g048870.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 244aa MW: 26902.2 Da PI: 6.8668 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim06g048870.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 69.7 | 4.2e-22 | 46 | 101 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
+Dgy+WrKYGqKe+ gs+fpr Ct++ +Cp+kk+v+r ++dp v+e+tY+++H++
Sopim06g048870.0.1 46 EDGYTWRKYGQKEILGSRFPR----CTHQklyHCPAKKQVQRLDNDPYVFEVTYRSQHTC 101
7*******************6....99998999*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MFCSYDILIA VSFAHFFSFV CRTGDRDRRT LRVGAPRMGN LELPPEDGYT WRKYGQKEIL 60 GSRFPRCTHQ KLYHCPAKKQ VQRLDNDPYV FEVTYRSQHT CYMSATAPTV PPPSAEEMTH 120 KTTTTLPPAP LLLPPPTSAS LSGHWLSMDI KPQGDQAGTS YTTTPFDIQR DFGHGSVGSL 180 ASLVTAGVGD VGPSGGRYGR EIDYQPVVDM ADAMFNSGSS SNTSMDKIFS SIDDKWDTAE 240 KKE*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975518 | 1e-176 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |