PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g008030.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 513aa    MW: 56181.2 Da    PI: 5.6676
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g008030.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.2e-16307353455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  Er+RRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Sopim06g008030.0.1 307 VHNLSERKRRDRINEKMKALQELIPCC-----NKSDKASMLDEAIEYLKSLQ 353
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-20301370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.241303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-17306357No hitNo description
PfamPF000108.9E-14307353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-20307361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-19309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MNYCVVPDFK MDDDYYDIPS AIFNKKSTIA DEEIMELVWQ NGGVIMQSQN QRSVRKSNLF  60
PEQSAVEQTV AVSAPLYMQE DEMNSWLQSP LDDSSFDDFL NTTPSCDAVT SAAAAPPGEI  120
GTSKVEIRPP LVPPCSRPIR CTEGELPHRL QNFGHFSRLS GEAVLRNGTT SSSGHSVRAS  180
TIVDSNETPV AARVSENVTP VTAMNVRGRE LTATSMATTS GGREVTMACE LALTASTRGS  240
GGSVSARAGP PQPSHTEADT AAYDRKRKSR ESDDNEGQSE DVEYEFADAR KQVRSSTSAK  300
KSRAAEVHNL SERKRRDRIN EKMKALQELI PCCNKSDKAS MLDEAIEYLK SLQLQVQMMA  360
TGCSMVPMMY PGIPQYMPTM GMNMSMGMDM KMGRNRPLIS YPPLMPGPAM QNAAAAAQMA  420
PQYPLPAYHL PPFPAPDPSR IPVANQPNSH VGHNISQPRL PNFSDPYYQY FGLQQAQLML  480
PQNQEVEQLS SSKLNSCIEG SRGNHQSGEH TI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311316ERKRRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321805.10.0transcription factor PIF1 isoform X1
TrEMBLA0A3Q7GMS10.0A0A3Q7GMS1_SOLLC; Uncharacterized protein
STRINGSolyc06g008030.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.32e-51phytochrome interacting factor 3-like 5