PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g005330.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 237aa MW: 27881.6 Da PI: 9.2869 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.9 | 2.3e-13 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W ++Ed++l+ +v++lG ++W+ a+ g++Rt+k+c++rw +yl Sopim06g005330.0.1 8 KGPWMEQEDLQLAFYVNLLGDRRWDFLAKVSGLRRTGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.5e-17 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l+++++ ++G++ W++Iar++ gRt++++k++w++++ Sopim06g005330.0.1 61 RGKMTPQEERLILELHSKWGNR-WSRIAREVS-GRTDNEIKNYWRTHM 106 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.348 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.67E-26 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-9 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-12 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-19 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.07E-5 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 26.594 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-16 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.35E-10 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAQEAMRKGP WMEQEDLQLA FYVNLLGDRR WDFLAKVSGL RRTGKSCRLR WVNYLHPGLK 60 RGKMTPQEER LILELHSKWG NRWSRIAREV SGRTDNEIKN YWRTHMRKKA QDERKLKKAS 120 SIISPSSSFS NTSSFSSNSP DVDFTPIMKN NERNFYDTGG LQKKVVDHDK GKNMKVYSMD 180 DIWKDIELSE ENETKSTKQI MSSPIWDYCP NTLWMADDQE ENKMFPMFYC LDNQDI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-24 | 8 | 110 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019069701.1 | 1e-178 | transcription factor MYB48-like | ||||
Swissprot | Q9LX82 | 2e-73 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A3Q7GNQ5 | 1e-177 | A0A3Q7GNQ5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g005330.2.1 | 1e-177 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 1e-74 | myb domain protein 48 |
Publications ? help Back to Top | |||
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