 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim06g005090.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
LBD |
| Protein Properties |
Length: 199aa MW: 21710.6 Da PI: 4.906 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim06g005090.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 133.5 | 8.5e-42 | 45 | 144 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
+CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+
Sopim06g005090.0.1 45 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPEFQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVNELQ 135
7****************************************************************************************** PP
DUF260 92 aelallkee 100
++la++++e
Sopim06g005090.0.1 136 VQLAKAQAE 144
****99976 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 199 aa
Download sequence Send
to blast |
MESSSDTTNA TTITSSPPSS RSVSPSSSSP PNSPPSPQVA VVISPCAACK ILRRRCAEKC 60
VLAPYFPPND PIKFTTAHRV FGASNIIKFL QELPEFQRAD AVSSMVYEAN ARLRDPVYGC 120
AGAICQLQKQ VNELQVQLAK AQAEVVNMQC EQANFMTLFC MENMTQSPPQ QSLDNFTQIN 180
MSILDDNNVG SIWETLWT*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
| GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
