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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim05g055750.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 460aa MW: 51645.4 Da PI: 8.8356 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim05g055750.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 97.2 | 1.1e-30 | 70 | 127 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
dDgy+WrKYGqK+vkgs+fprsYY+Ct ++C v+kkve + +++v+ei+Y+g H+h+k
Sopim05g055750.0.1 70 DDGYTWRKYGQKQVKGSNFPRSYYKCTEPKCLVRKKVESAP-NGHVIEIVYNGAHTHPK 127
8***************************************9.***************85 PP
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2 | WRKY | 103.7 | 9.9e-33 | 254 | 311 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
+Dgy+WrKYGqK+vkg+++prsYY+Cts gC+v+k+ver+a+d k v++tYeg+Hnhe
Sopim05g055750.0.1 254 EDGYRWRKYGQKVVKGNPNPRSYYKCTSGGCTVRKHVERAADDFKSVITTYEGKHNHE 311
8********************************************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 460 aa
Download sequence Send
to blast |
MDFLTIPPGI SPAALLDSPF MQPTSLTPTK NVGEILNCIE SRKNEEEFSK KQNQQYEQRG 60 IYNSANNSSD DGYTWRKYGQ KQVKGSNFPR SYYKCTEPKC LVRKKVESAP NGHVIEIVYN 120 GAHTHPKTRR KTSDVVAQQN GSSSSSDLLW RNDQYSRDVA AALEPVISDA SDSMLSNNIN 180 NVFESNDISS KLTTFDAENE HLATHFLGDG INQYEFETKR RKKDGYLAEP SSLSRTVREP 240 KVVLQVASEI DILEDGYRWR KYGQKVVKGN PNPRSYYKCT SGGCTVRKHV ERAADDFKSV 300 ITTYEGKHNH EVPSTNKTNG VSGNVRSASM LNNGQQPCTT TSRKSLKDSN TRVQFQDLPI 360 PFERKHFMGS EYLRPSYLGD LSYGATSLQL PDFPLPLPLP SRMSFPARQN ESHFHLNTNF 420 LLPNGASNSF LADGSTQNIH GDNNNSRLVK AKDEIQYWT*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC238789 | 0.0 | AC238789.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 5 clone C05HBa0142A20, complete sequence. |
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |