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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim05g053380.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 296aa MW: 33384.1 Da PI: 7.8285 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim05g053380.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 104.7 | 5e-33 | 153 | 211 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDg++WrKYGqK vk+s+fprsYYrCt+++C vkk+vers +d+++v++tYeg H+h+
Sopim05g053380.0.1 153 LDDGFRWRKYGQKAVKNSPFPRSYYRCTTSSCGVKKRVERSIQDTSIVITTYEGVHTHP 211
59********************************************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MEKENNVRTE ITNTSNWSSN AMFDIEKDYS LSFLLETMFG VDEHRNYCYD NTTTSSIFDL 60 LMIPSHQQQL QPQRFITCSS LPESSSILLS DHLINNVPVT PNSSSISSSS TELAANDDHQ 120 HKYKKQLKPN KKKQKGEKEP RFAFMTKSEI DHLDDGFRWR KYGQKAVKNS PFPRSYYRCT 180 TSSCGVKKRV ERSIQDTSIV ITTYEGVHTH PCPITPRGWV GVQPVTTTYG GRVGGGDGGG 240 RCCHYGDYSS SLFSTNNSLQ EKRFWSSSNS SLAKDDHGLL QDMVSSRMRS DLIEE*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |