PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim05g051060.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 285aa MW: 32151.8 Da PI: 8.4661

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim05g051060.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.5	2.7e-32	113	166	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Sopim05g051060.0.1 113 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 166 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-15	110	166	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-28	111	166	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-23	113	166	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-7	114	165	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MNSYHGVSLL DPIKGIPIYH HHQDPKRSSS FGSIYHNNLD HISYSNNSYV TNVASSSPYN 60 RIPIVANRFQ NQQHIYYNGV GLLGSPSSHE SNNFLMRSRF LPKFPTKRSM RAPRMRWTTS 120 LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH LQMYRTVKTT DKPAASSDGS 180 GEEDLLAIDK ILDQRGPLDG CDEPSTTLWS NSSSSRERLS QANFNESNGL IRSSSFPSQQ 240 RFSHHIEECE YSRAMSYVGC SLDQKNPSLE FTLGRSDWVE KNHD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-17	114	168	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-17	114	168	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-17	114	168	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-17	114	168	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269\|PubMed:11395775, ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:14561401, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928, ECO:0000269\|PubMed:18849474, ECO:0000269\|PubMed:20179097}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by AS2 in adaxial tissue. {ECO:0000269\|PubMed:18849474}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC239583	0.0	AC239583.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 5 clone C05HBa0201O22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004240040.1	0.0	transcription repressor KAN1-like isoform X1
Swissprot	Q93WJ9	2e-68	KAN1_ARATH; Transcription repressor KAN1
TrEMBL	A0A3Q7GNA5	0.0	A0A3Q7GNA5_SOLLC; Uncharacterized protein
STRING	Solyc05g051060.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2468	23	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	2e-65	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang T,Kerstetter RA,Irish VF APUM23, a PUF family protein, functions in leaf development and organ polarity in Arabidopsis. J. Exp. Bot., 2014. 65(4): p. 1181-91 [PMID:24449383] Mach J Getting in Shape? Leaves work it out with KANADI1. Plant Cell, 2014. 26(1): p. 4 [PMID:24464293] Jun SE, et al. Comparative analysis of the conserved functions of Arabidopsis DRL1 and yeast KTI12. Mol. Cells, 2015. 38(3): p. 243-50 [PMID:25518926] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442] Xie Y, et al. Meta-Analysis of Arabidopsis KANADI1 Direct Target Genes Identifies a Basic Growth-Promoting Module Acting Upstream of Hormonal Signaling Pathways. Plant Physiol., 2015. 169(2): p. 1240-53 [PMID:26246448] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Singh A, et al. Phytohormonal crosstalk modulates the expression of miR166/165s, target Class III HD-ZIPs, and KANADI genes during root growth in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 3408 [PMID:28611467] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530] Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers. Development, 2018. [PMID:29361563]