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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim05g050340.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 328aa MW: 36725 Da PI: 6.0602 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim05g050340.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 75.4 | 6.9e-24 | 129 | 185 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
+Dg +WrKYGqK++ gs++pr YYrC+ + C ++k v+r ++ p ++eitY g+H +
Sopim05g050340.0.1 129 EDGLSWRKYGQKVISGSKYPREYYRCARRCCGATKMVQRIETGPLTFEITYGGSHSC 185
7******************************************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MGENSCWERE VVITELTKGK ELMLQLQKHF DPMKQGVCQY LAAEILSSYD KAMSLLNGTA 60 LSGMMMSKGK EIIHSTPSSS TAPQLESPHL LADSSTKSCH RPSNYRKRKM LERRKEYVEA 120 RPGEEVPPED GLSWRKYGQK VISGSKYPRE YYRCARRCCG ATKMVQRIET GPLTFEITYG 180 GSHSCGQETK NQDEELLAVQ QTKCDEVERG AGEIFESYIH KMVSTPNNSY NNSSTGVVFS 240 NSNSLFNIPT PTSSPHPDTD FLLDDNNLAL LFDHDVPENS GNDSLAALAG EVYKLYEENN 300 KLNFPHRYDK QAEAENSRPL NNVGDRS*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |