|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sopim05g050330.0.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
WRKY |
Protein Properties |
Length: 245aa MW: 27538.3 Da PI: 6.283 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim05g050330.0.1 | genome | CSHL | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 68.5 | 1e-21 | 128 | 184 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
+Dg nWrKYGqK + g+++pr Y++C + +C ++k v++ +++p +e tY g+H +
Sopim05g050330.0.1 128 KDGLNWRKYGQKLILGAKYPREYFQCVYCHCDATKMVQQIEKEPLSFEATYGGSHSC 184
7******************************************************98 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MGENSFWERE VVITELTKGK ELMLQLQKHF DPMKQDVCRY LAAEILSSYD KAMSLLNGTA 60 LSGMMSKSKE IINPAPSSST APQLEFPQLL ADSSTKSCDL PSKLRKRKTL APRTEYVEAR 120 PGEEVSPKDG LNWRKYGQKL ILGAKYPREY FQCVYCHCDA TKMVQQIEKE PLSFEATYGG 180 SHSCGQENKN QNEEVLVTVE TQVGRAAGQL SECYIPEMVL TQNNSYKTKY PSDSTYDTIL 240 QLFS*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | HG975517 | 1e-174 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |