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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sopim05g050300.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 196aa MW: 22588.9 Da PI: 6.3037 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim05g050300.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 61 | 2.1e-19 | 27 | 81 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
+Dg++WrKYG+K v++ + YYrC+ + C ++k v+r++++ ++e+tY g+Hn++
Sopim05g050300.0.1 27 EDGFSWRKYGKKLVQNIP---EYYRCARHYCGATKMVQRTETESLTFEVTYGGSHNCD 81
7*************9876...7**********************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 196 aa
Download sequence Send
to blast |
MINHYRKKLA RRTEFVEARP GEEVPPEDGF SWRKYGKKLV QNIPEYYRCA RHYCGATKMV 60 QRTETESLTF EVTYGGSHNC DQAENNNQNE QLVFVVQTHV RRTTGELSEF YIHETPNNSH 120 NNLFSNSNSV FNMNNSDFVP TPTSSTHPVD NNSRTDLLFV HDVPENTRST YESSANDLDS 180 PGYMLKKFLS FDYLI*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |