PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g050300.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 196aa    MW: 22588.9 Da    PI: 6.3037
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g050300.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY612.1e-192781259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                        +Dg++WrKYG+K v++ +    YYrC+ + C ++k v+r++++  ++e+tY g+Hn++
  Sopim05g050300.0.1 27 EDGFSWRKYGKKLVQNIP---EYYRCARHYCGATKMVQRTETESLTFEVTYGGSHNCD 81
                        7*************9876...7**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-201682IPR003657WRKY domain
PROSITE profilePS5081115.2622183IPR003657WRKY domain
SuperFamilySSF1182901.7E-182482IPR003657WRKY domain
SMARTSM007741.8E-212682IPR003657WRKY domain
PfamPF031066.1E-182781IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MINHYRKKLA RRTEFVEARP GEEVPPEDGF SWRKYGKKLV QNIPEYYRCA RHYCGATKMV  60
QRTETESLTF EVTYGGSHNC DQAENNNQNE QLVFVVQTHV RRTTGELSEF YIHETPNNSH  120
NNLFSNSNSV FNMNNSDFVP TPTSSTHPVD NNSRTDLLFV HDVPENTRST YESSANDLDS  180
PGYMLKKFLS FDYLI*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345568.18e-81PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A3Q7GI671e-125A0A3Q7GI67_SOLLC; Uncharacterized protein
STRINGSolyc05g050300.1.11e-144(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2809922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-16WRKY family protein