 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim05g048740.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
LBD |
| Protein Properties |
Length: 216aa MW: 23677 Da PI: 4.8347 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim05g048740.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 137.4 | 5.2e-43 | 54 | 153 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
+CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpee+r da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+
Sopim05g048740.0.1 54 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKMLQELPEEQRVDAVNSMVYEANARIRDPVYGCAGAICQLQKQISELQ 144
7****************************************************************************************** PP
DUF260 92 aelallkee 100
ae a++++e
Sopim05g048740.0.1 145 AEFAKAQAE 153
*****9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 216 aa
Download sequence Send
to blast |
MECSDHKTTT TISSMNSSSS TFASTISTTP TSGLLSPKSS ILLSTPPMNV VLSPCAACKI 60
LRRRCVEKCV LAPYFPPTDP LKFTIAHRVF GASNIIKMLQ ELPEEQRVDA VNSMVYEANA 120
RIRDPVYGCA GAICQLQKQI SELQAEFAKA QAEILNLKCQ NSNLLALVCM EVSENSSNSL 180
LLSSDHINDY ENNNDNTSMF LEDNNLYGAW EPLWT*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
