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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g047460.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARF | ||||||||
Protein Properties | Length: 1098aa MW: 120915 Da PI: 6.3769 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62 | 9.5e-20 | 130 | 231 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ + W++++ yr++++r++lt+GW+ v+ ++L +gD+v+F +d Sopim05g047460.0.1 130 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySLQPPA-QELVARDLHDNIWTFRHVYRGQPKRHLLTTGWSLVVSGKRLFAGDSVLFIRD 219 99*****************************9777766.49************************************************65 PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++f +++++++ Sopim05g047460.0.1 220 EKHQF--LLGIRKA 231 54555..9998875 PP | |||||||
2 | Auxin_resp | 118.1 | 7.3e-39 | 256 | 339 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPra++seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ Sopim05g047460.0.1 256 AAHAAANNSPFTVFYNPRAGPSEFVIPLAKYYKATYsSQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 339 79*******************************99879********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-38 | 121 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.15E-41 | 121 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.07E-17 | 129 | 230 | No hit | No description |
SMART | SM01019 | 4.4E-21 | 130 | 232 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-17 | 130 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.138 | 130 | 232 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.1E-34 | 256 | 339 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 27.748 | 985 | 1069 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.5E-6 | 987 | 1070 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.65E-6 | 1003 | 1063 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1098 aa Download sequence Send to blast |
MKTPGNGAGG GNVNPAEGEK KNLNPELWQA CAGPLVNLPV AGTHVVYFPQ GHSEQVAASI 60 KKDVEAQIPN YPNLPAKLIC LLHNVTLHAD PETDEVYAQM TLQPVPSFDK EALLRSDLSM 120 KANKPQPEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD YSLQPPAQEL VARDLHDNIW 180 TFRHVYRGQP KRHLLTTGWS LVVSGKRLFA GDSVLFIRDE KHQFLLGIRK ANRQPTNLSS 240 SVLSSDSMHI GILAAAAHAA ANNSPFTVFY NPRAGPSEFV IPLAKYYKAT YSSQISLGMR 300 FRMMFETEES GTRRYMGTIT GISDLDPVRW KNSQWRNLQV GWDESTAGER INRVSIWEIE 360 PITAPFLICS SPFFSSKRPR QPGMPDGDYS DMDGMFKRTM PWLGDDFGMA DPQGLPGLSL 420 IQWMNMQKNP SLANPMIPNY MNSLSGSALQ NLAGADLSRQ LGMAAPQFQQ QQQMQHNLQF 480 NNAHRPNQQL DQLQKLPAAA LNSLDSIMQS QQQLSDVSQQ PRQNLTTQSL PTTQVHTQHM 540 QAQSLGQSQN VLPPQQSVQN QNQLQRNLPQ SLSQQHPQQQ ILGQTQQQSF MSSQAPDPVN 600 QQQHFSDNQA QLQMLQKLHQ QQKSLLAQQS GLQQPSQLGS IQDHQKQLMD ASQNFSRSLA 660 TNQMLDASQT TSTSLPHSQV VQQQMTRINS PSNLRFSQPT QQPKLQQQQS GNLSDLSGPV 720 NYPLPRTSYQ LSANGSNLTG TAGGGQSVVI DDVPSWSTSV STNNCHSVVQ PNMNGRITGA 780 RDEMTHCSGP LEVMSANNNL QPKSDVKPSV NVVSKSQNHG FLAPQTLNTS GIQFDYLDSS 840 SSATSACLSQ NDVQLQQTAT DPLSGSSQPL IFRDSPDGGE VQGDPRNNVA FGAANMENNQ 900 LGLPMIPDPL ITKSSMGSRK DFSDNLSSGG GMLSSYENPK EAQPELLASM ASDYVTFNSI 960 DSTINDGSFM DRGAWEPPPQ LPRLRTYTKV YKRGAVGRSI DIARYSGYEE LKLDLARRFG 1020 IEGQLEDRQR IGWKLVYVDH ENDVLLVGDD PWEEFVSCVR CIKILSPQEV QQMSLDGDFG 1080 GSVLQNQDCS SSDAGDV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-165 | 19 | 360 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM565130 | 0.0 | HM565130.1 Solanum lycopersicum auxin response factor 19-1 (ARF19-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010321285.1 | 0.0 | auxin response factor 19-1 isoform X1 | ||||
TrEMBL | A0A3Q7GL62 | 0.0 | A0A3Q7GL62_SOLLC; Auxin response factor | ||||
STRING | Solyc05g047460.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1302 | 24 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |