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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim05g045880.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 322aa MW: 36329 Da PI: 8.7435 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim05g045880.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 85.9 | 3.7e-27 | 168 | 226 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D+++WrKYGqK +kgs+fpr+YY+C+++ +C++kk++e+s++d++++ + +geHnh+
Sopim05g045880.0.1 168 NDKWAWRKYGQKYIKGSPFPRNYYKCSTSkHCEAKKQIEKSSKDEDIFLVSCSGEHNHD 226
8*************************9988****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 322 aa
Download sequence Send
to blast |
MGDDNRDIGV VARSCNINKP NNVVYPKLGL NVSHVWNYFD KTLAPRMNSF TGSSEIVSLD 60 FPIIRQERSY DQVIISNQNN NQELYLHSIT PIQFIQQITV PQSRTIVECV PPTTTQAEWI 120 DKQKQLDIGA NSHPNFSFSM TTTLTQSQTR KNHSIMLTYE SSQQELTNDK WAWRKYGQKY 180 IKGSPFPRNY YKCSTSKHCE AKKQIEKSSK DEDIFLVSCS GEHNHDPPKS RRYLASCNNN 240 SKLNLPKGIN ISPKESIFNA SSSLSKRVKH STDVASPIIG TKPPLEIGSK NKMVVAVVHN 300 IGDGEEKVDM NEDIFMGIDQ L*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |