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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sopim05g045710.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 239aa MW: 26992.8 Da PI: 9.1447 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim05g045710.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 84.3 | 1.2e-26 | 85 | 143 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D+++WrKYGqK +kgs+fpr+YY+C ++ +C++kk++e+s++d++++ + geHnh+
Sopim05g045710.0.1 85 NDKWAWRKYGQKYIKGSPFPRNYYKCDTSkHCEAKKQIEKSSKDENIFLVSCFGEHNHD 143
8*************************6655****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 239 aa
Download sequence Send
to blast |
MGDDNRDIGV IARSCNINKP NNVVGPKLGL NMSHVWNYFD KPLSPCMSSF TSLSEIVSLD 60 FPIARQERSY DKMLTYESSQ EELTNDKWAW RKYGQKYIKG SPFPRNYYKC DTSKHCEAKK 120 QIEKSSKDEN IFLVSCFGEH NHDPPMSRRY LASCNNNSKF KLLKGINISP KESMFNASSS 180 SSKRVKHSTD VASPIIGTKP PLKIGSKNKM VVAVVHNIRD GEEKVDMNED IIMGIDQL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |