PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g041100.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 228aa MW: 26522.4 Da PI: 4.5925 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.6 | 7.9e-12 | 8 | 76 | 19 | 91 |
-HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 p ++++ +g+ + ++l+d+ g+ W + + +k + ++++ GW++F k+n ++ gDf++F +dg++ f Sopim05g041100.0.1 8 PTTYTDYVDGI--LPSNIILRDRFGNMWPIGV--TKEAKDIYFEYGWEKFIKDNIVELGDFFIFDFDGTRIFD 76 55555333555..4557***************..*******************************99876664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.239 | 1 | 83 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0016 | 3 | 83 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.34E-14 | 6 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.15E-6 | 7 | 72 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.5E-13 | 7 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.3E-9 | 16 | 75 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGFFKKLPTT YTDYVDGILP SNIILRDRFG NMWPIGVTKE AKDIYFEYGW EKFIKDNIVE 60 LGDFFIFDFD GTRIFDFTLL GRNGCVKKGV GSLKINVKEE EVEEMNVEHQ NSVESKENTR 120 ARDSKNISSF DITDENTLVE EKEDEQKEYE NREDVPEEEG EKEEPDEYKE DEDDKERTGI 180 LKKNDNTFQR RQFATNIFRS GGGTKPKKCF LRDKNTPRKE KSSVRSG* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025886771.1 | 1e-109 | B3 domain-containing protein REM21-like | ||||
Refseq | XP_025886772.1 | 1e-109 | B3 domain-containing protein REM21-like | ||||
TrEMBL | A0A3Q7GLC7 | 1e-155 | A0A3Q7GLC7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g041100.1.1 | 1e-163 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1091 | 22 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06160.1 | 7e-13 | B3 family protein |