PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g026180.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 494aa MW: 55358.5 Da PI: 6.8671 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.4 | 2.5e-35 | 48 | 191 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 lp+G++F+Ptd+el+ e+L++kv +k+ ++++ i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ Sopim05g026180.0.1 48 LPAGVKFDPTDQELI-EHLEAKVVAKEskshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecq 136 799************.99****999885665443333333666646**********.555666799******************7565555 PP NAM 78 ...tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g++ g+kk+Lv+y g+++k+ekt+Wvmh+y+l Sopim05g026180.0.1 137 dlqGGETRWHKTGKTRPVMV-NGKQRGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 191 54433778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-39 | 44 | 210 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.496 | 48 | 210 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.4E-16 | 49 | 191 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MNKSSHQLGS ISSSDLIDAK LEEHQLCGSK QCPGCGHKLE GKPDWVGLPA GVKFDPTDQE 60 LIEHLEAKVV AKESKSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA 120 YTTGTRKRRK IQTECQDLQG GETRWHKTGK TRPVMVNGKQ RGCKKILVLY TNFGKNRKPE 180 KTNWVMHQYH LGQHEEEKEG ELVVSKIFYQ TQPRQCNWSN TTSSAAGDQA NSDVNSRRDS 240 GSGSCSSSKD INNSNNIPSS HRDELSAAVC AAMSSYSTMD IQQYKPEHFS FLPFRKTFDH 300 DQAGIHVVGE GSMTREGGPT AAAPEERDMG EPHDAQHQHQ HQHQHQHQHH LVANSAFHIS 360 RPTPPISAII TPPPLHNTSV ILGEDAFHVP RSIILPNDNF QTIHDDKYDY VLIECIIFRQ 420 QQQHHKLGAR SASELEQLIM GCTSTDIKGD KEYPIACMGF SSQKESSITN SQDADWLKYS 480 HFWPDPDNPD HHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-12 | 46 | 191 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010321135.1 | 0.0 | NAC domain-containing protein 75 isoform X1 | ||||
Refseq | XP_010321136.1 | 0.0 | NAC domain-containing protein 75 isoform X1 | ||||
Refseq | XP_025886968.1 | 0.0 | NAC domain-containing protein 75 isoform X1 | ||||
Swissprot | Q9M0F8 | 1e-177 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A3Q7GJL5 | 0.0 | A0A3Q7GJL5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g026180.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4057 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-145 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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