PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g017740.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 175aa    MW: 20314.2 Da    PI: 6.5131
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g017740.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.91.4e-111299294
                        EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                        +k+ ++  +  ++ + lp  f+++++++   sk   l++ e g sWe k+  rkk++ ++ +k W +Fv  ++++ +D+++F+l+++s+  l+
  Sopim05g017740.0.1 12 CKIILSRETVMNK-MQLPSCFVKDNKKI--LSKNCLLKTsEAGMSWEAKI-ARKKPNYFICEKDWPQFVLHHQVEPRDILIFSLIEKST--LH 98
                        5555444444444.99*******99866..666777777699********.6999999*************************997444..35 PP

                        E CS
                  B3 94 v 94
                        v
  Sopim05g017740.0.1 99 V 99
                        5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.26E-155107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-155105IPR015300DNA-binding pseudobarrel domain
CDDcd100177.46E-89100No hitNo description
PROSITE profilePS508639.81210105IPR003340B3 DNA binding domain
PfamPF023621.5E-91196IPR003340B3 DNA binding domain
SMARTSM010199.8E-511105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MLMDTDQPPS FCKIILSRET VMNKMQLPSC FVKDNKKILS KNCLLKTSEA GMSWEAKIAR  60
KKPNYFICEK DWPQFVLHHQ VEPRDILIFS LIEKSTLHVR PYTPKNCRNI TRKRQLSYEE  120
LSSSSSSEEE IGPSKRVKKM EPIIVVSDTE EEYVDMSFSD DDEDDPPYSH RATY*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075920.21e-112uncharacterized protein LOC107020115
TrEMBLK4BZ341e-125K4BZ34_SOLLC; Uncharacterized protein
STRINGSolyc05g017740.1.11e-126(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48881327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.15e-07B3 family protein