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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g014830.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YC | ||||||||
Protein Properties | Length: 293aa MW: 33015.9 Da PI: 10.7515 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 27.2 | 8.2e-09 | 22 | 102 | 18 | 97 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt.rtdifdflvdivp 97 ++P+ari + lk+ + k++ a aPv+l+ e++ +e+ + + a++ k++ + i+ a+ + ++fl d+ + Sopim05g014830.0.1 22 SLKFPVARIARFLKVGKYAKRVGAGAPVFLADVLEYLAVEVLELAGIAARNDKKTRITPRHIQLAIRfDKELYQFLRDVTI 102 6689**************************************99*******************999736789******875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00414 | 1.2E-50 | 2 | 122 | IPR002119 | Histone H2A |
Gene3D | G3DSA:1.10.20.10 | 8.6E-46 | 6 | 120 | IPR009072 | Histone-fold |
CDD | cd00074 | 3.27E-51 | 11 | 117 | No hit | No description |
Pfam | PF00125 | 8.1E-15 | 12 | 89 | IPR007125 | Histone H2A/H2B/H3 |
PRINTS | PR00620 | 6.6E-38 | 13 | 35 | IPR002119 | Histone H2A |
SuperFamily | SSF47113 | 7.49E-35 | 14 | 117 | IPR009072 | Histone-fold |
PRINTS | PR00620 | 6.6E-38 | 42 | 57 | IPR002119 | Histone H2A |
PRINTS | PR00620 | 6.6E-38 | 57 | 70 | IPR002119 | Histone H2A |
PRINTS | PR00620 | 6.6E-38 | 71 | 85 | IPR002119 | Histone H2A |
Pfam | PF16211 | 1.4E-10 | 92 | 125 | IPR032454 | Histone H2A, C-terminal domain |
PRINTS | PR00620 | 6.6E-38 | 99 | 117 | IPR002119 | Histone H2A |
SMART | SM00414 | 1.0E-39 | 159 | 279 | IPR002119 | Histone H2A |
Gene3D | G3DSA:1.10.20.10 | 9.6E-40 | 176 | 277 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.3E-29 | 177 | 274 | IPR009072 | Histone-fold |
Pfam | PF00125 | 3.6E-10 | 179 | 246 | IPR007125 | Histone H2A/H2B/H3 |
Pfam | PF16211 | 9.1E-12 | 249 | 282 | IPR032454 | Histone H2A, C-terminal domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MVSEGKNLGS NAKRRSRSSK ASLKFPVARI ARFLKVGKYA KRVGAGAPVF LADVLEYLAV 60 EVLELAGIAA RNDKKTRITP RHIQLAIRFD KELYQFLRDV TILNGGVIQK IHKILQPNNK 120 SNASKAVVAA DCQLRYDLYF TTMHLLMSLR YFGWFEDSSM RLLSCIHHLH RIILFVKASL 180 KFPVARIARF LKVGKYAKHV GAGALVFLVV VLEYLAVEVL ELAGIAERND KKTRITPRHI 240 QLAIRFDKEL YQFLRDVTIP NGGVIPKIHK NFLPHNKSNT SKVVATAQEE ED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1eqz_A | 2e-40 | 1 | 285 | 1 | 128 | PROTEIN (HISTONE H2A) |
1eqz_E | 2e-40 | 1 | 285 | 1 | 128 | PROTEIN (HISTONE H2A) |
1hq3_A | 2e-40 | 1 | 285 | 1 | 128 | HISTONE H2A-IV |
1hq3_E | 2e-40 | 1 | 285 | 1 | 128 | HISTONE H2A-IV |
1tzy_A | 2e-40 | 1 | 285 | 1 | 128 | Histone H2A-IV |
1tzy_E | 2e-40 | 1 | 285 | 1 | 128 | Histone H2A-IV |
2aro_A | 2e-40 | 1 | 285 | 1 | 128 | Histone H2A-IV |
2aro_E | 2e-40 | 1 | 285 | 1 | 128 | Histone H2A-IV |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 1e-123 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239507.1 | 4e-86 | histone H2A-beta, sperm-like | ||||
Swissprot | O81826 | 1e-50 | H2A3_ARATH; Probable histone H2A.3 | ||||
TrEMBL | A0A4D6NCD9 | 3e-89 | A0A4D6NCD9_VIGUN; Histone H2A | ||||
STRING | Solyc05g014830.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA27824 | 2 | 2 |
Publications ? help Back to Top | |||
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