PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g014590.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 232aa    MW: 26551.2 Da    PI: 5.7533
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g014590.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-124691555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        +   Er RR++++++++ Lr l+Pk      +K++Ka+i++ A+eYI +Lq
  Sopim05g014590.0.1 46 NIVSERIRRNKLKEKLFALRALVPKI-----TKMDKASIVKDAIEYIVKLQ 91
                        5567*********************7.....7***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.49E-113993No hitNo description
PROSITE profilePS5088815.0974190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-1544109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-104691IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-124796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1547109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MENMVEENNN YLETTILFQQ DSYLDEPIMS SYYDSTSPEG SQSSKNIVSE RIRRNKLKEK  60
LFALRALVPK ITKMDKASIV KDAIEYIVKL QKQDRRIRGE ISKLESETSN KNSTHLQHET  120
FDFSNPKTLD EHQYGYHSSP IDVLQLRVSS MRDRIVVVNL TCIKRKDTMI KLCDVFESLN  180
IKIITTNIIA YSETLLNTTY IEADVEESNL LMLRIQSAIA SLNNSDSPLS S*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755171e-118HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239187.11e-168transcription factor bHLH35 isoform X1
TrEMBLA0A3Q7GGV41e-167A0A3Q7GGV4_SOLLC; Uncharacterized protein
STRINGSolyc05g014590.2.11e-167(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.17e-64bHLH family protein