PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim05g014040.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 291aa MW: 32426 Da PI: 9.682 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 41.7 | 2.3e-13 | 148 | 188 | 20 | 59 |
S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 20 fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +r+YY+C+++ +C++kk++e+s +d++++++ +g Hnh+ Sopim05g014040.0.1 148 RTRNYYKCSTSkHCEAKKQIEKSPKDENIFVVSCSGGHNHD 188 68******9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 1.3E-5 | 119 | 189 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-10 | 134 | 190 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-10 | 145 | 190 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.8E-10 | 146 | 188 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.33 | 150 | 190 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 291 aa Download sequence Send to blast |
MGDYDRDRGA IEKSCNISIP NNIVAPKLGL KSSHVWNYFD KPLAPSMTSF NGLSEIVSLD 60 FPIARQDRSY DQVIITNQNN NEQLYLHTIQ SVQFIQQTVV PQSRTMVACV PPITTPQKCI 120 DLQQQPDIRA NIHPNLTFSM KTPLTQSRTR NYYKCSTSKH CEAKKQIEKS PKDENIFVVS 180 CSGGHNHDPP MNRRYLASCN NDSKFKIPKG INSLPKASIL NASSSSSMRI KHSRVVTSPI 240 IATKPTLEIG SKNKMVVAVV QNKGDDNIKV NMTEDIFMGI DQLQRATTST * |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027773000.1 | 1e-151 | probable WRKY transcription factor 14 | ||||
TrEMBL | K4BYC4 | 0.0 | K4BYC4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g014040.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3668 | 13 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52830.1 | 4e-11 | WRKY DNA-binding protein 27 |