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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim05g012770.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 509aa MW: 55396 Da PI: 7.8787 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim05g012770.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 107 | 9.3e-34 | 216 | 272 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
dDgynWrKYGqK+vkgse+prsYY+Ct ++Cpvkkkvers d++v+ei+Y+g+Hnh+
Sopim05g012770.0.1 216 DDGYNWRKYGQKQVKGSEYPRSYYKCTNPNCPVKKKVERSL-DGQVTEIIYKGQHNHQ 272
8****************************************.***************8 PP
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2 | WRKY | 107 | 9.2e-34 | 394 | 452 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+a+dpk+v++tYeg+Hnh+
Sopim05g012770.0.1 394 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSQGCNVRKHVERAASDPKAVITTYEGKHNHD 452
59********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009723 | Biological Process | response to ethylene |
GO:0009751 | Biological Process | response to salicylic acid |
GO:0009753 | Biological Process | response to jasmonic acid |
GO:1900150 | Biological Process | regulation of defense response to fungus |
GO:1900425 | Biological Process | negative regulation of defense response to bacterium |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 509 aa
Download sequence Send
to blast |
MAENEGSSSS STSRGQLLRP TITLPPRSSM ESLFSGGSSG ISPGPMTLVS SFFSDNDPDS 60 ECRSFSQLLA GAMTPPAGFT GVRPGFPPLP PPSTAAITQS PTAFTVPPGL SPTSLFDGFF 120 SPGQGPFGMS HQQVLAQLTS QASQAQSQMH IQPNYPSSAT AAALSMSQFQ SLPSNAAANR 180 QIPPTLDPNI VKESSDVSLS DQRSEPASFA VDKPADDGYN WRKYGQKQVK GSEYPRSYYK 240 CTNPNCPVKK KVERSLDGQV TEIIYKGQHN HQPPQASKRS KESGNPNGNY NLQGPYELSS 300 EGLTGNYNKP KEGEPSYSLR MKDQESSQAN DQTSGSSDSE EVGNAETRVD GRDIDERESK 360 RRAVEVHSTE AACSHRTVAE PRIIVQTTSE VDLLDDGYRW RKYGQKVVKG NPYPRSYYKC 420 TSQGCNVRKH VERAASDPKA VITTYEGKHN HDVPAARNSS HNTANNSMSQ LRPHNPVVDR 480 PAAMRRADFQ SNEQQPIALL RFKEEQSI*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB711125 | 0.0 | AB711125.1 Solanum tuberosum StWRKY12 mRNA for transcription factor, complete cds. |