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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g011810.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 326aa MW: 36162.7 Da PI: 5.9927 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.8 | 5.1e-15 | 44 | 93 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr l+P+ ++K + a+ L ++++Y+++Lq Sopim05g011810.0.1 44 RSKHSVTEQRRRSKINERFQMLRNLIPHT----DQKRDTASFLFEVIQYVQYLQ 93 899*************************8....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.2E-22 | 40 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.63E-18 | 40 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.421 | 42 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-12 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.87E-14 | 44 | 97 | No hit | No description |
SMART | SM00353 | 5.5E-11 | 48 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MKSGKGHHVE EEEDEYDFGS NRDATPSSNS TKDGKNSDKA NAIRSKHSVT EQRRRSKINE 60 RFQMLRNLIP HTDQKRDTAS FLFEVIQYVQ YLQDTVQKYE GSYQPWSSEP TKLMPWRNTQ 120 WRAQSFPANP QALNNGTDAG PTYSGRFDEN LLTVTSSMQA NQRNPLESHS GGDVKSMDQG 180 KELARTAIAT SMPLQASMPV PFQNDSAFSD SLPTPASDEC PRTTNALNDQ EFMVEGGTIN 240 FSNTYSQGLL NSLTHALQAT GLDLSQASIS VQINLGKRAN KERALGPSVA KDTENPPPAP 300 GDQFLEFRDT NNGEELNQAQ KRLKK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010320831.1 | 0.0 | transcription factor BIM2-like isoform X2 | ||||
Swissprot | Q9CAA4 | 3e-90 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A3Q7H7T9 | 0.0 | A0A3Q7H7T9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g011810.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4426 | 23 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 1e-92 | BES1-interacting Myc-like protein 2 |
Publications ? help Back to Top | |||
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