PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g010740.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 238aa MW: 26591 Da PI: 9.3531 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 39.8 | 1.3e-12 | 1 | 27 | 102 | 128 |
NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 +kktLvfykgrap+gekt+Wvmheyrl Sopim05g010740.0.1 1 MKKTLVFYKGRAPRGEKTNWVMHEYRL 27 8************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.613 | 1 | 50 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.23E-17 | 1 | 50 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-5 | 1 | 27 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MKKTLVFYKG RAPRGEKTNW VMHEYRLIPN HPTEHTRYQD EWNVCRVLQK SNAGGKRYSS 60 NNNTLRIHVN PYTTLDQINP NTICISSQIM MPQVEHNTFQ LAMGKSSSSS SSAHTVINHP 120 DIQEVFRGVS SSNLMNLHPT LQSQMNNNLG GGNGFTISGL NFNLGGATTS QPGPPPPRPR 180 QDVSSSHVMM TAHDDQAGYG EDMSRFMVLK NSSHDLDNCW GMIYVVRILQ KIAYQTL* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004246074.1 | 1e-116 | NAC domain-containing protein 79 | ||||
TrEMBL | K4BXP6 | 1e-178 | K4BXP6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g010740.1.1 | 1e-179 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA27792 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 4e-20 | NAC domain containing protein 38 |