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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim05g009900.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 354aa MW: 40361 Da PI: 9.2561 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.8 | 3.9e-38 | 135 | 241 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92 +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LGfdk+s+tieWL+ ++k aikel ++ s+ + Sopim05g009900.0.1 135 TGKKDRHSKICTAQGVRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLFSKSKNAIKELSRNISQES---------------------- 203 79**************************************************************33333...................... PP TCP 93 saakskksqksaasalnlakesrakarararertrekmrik 133 +s++++++++ +l + +s + ra+ re+t+ekm+ik Sopim05g009900.0.1 204 ---NSSDQNNDDHRKLRKIGSSDKPIRAKTREKTKEKMMIK 241 ...22334445554466666777777777777788877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.9E-37 | 135 | 253 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 36.873 | 137 | 195 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MFPKSNIIHD PFSFTSQELL KQSYSTHDQN PNSPSKVVED EDHPFFLNNF FPSPFLDDHE 60 LPLNQIFSQK HHQKQEASDN HDINQADPDN TIKDNHSVDN SRSTQLNTKI MGDQSSNPAI 120 SSKKRKLSAK PRRRTGKKDR HSKICTAQGV RDRRMRLSLQ IARKFFDLQD MLGFDKASNT 180 IEWLFSKSKN AIKELSRNIS QESNSSDQNN DDHRKLRKIG SSDKPIRAKT REKTKEKMMI 240 KLGHNKKGNQ ELDETNPMST IDPKLGSNPK SLEHQFANVG IMERYLGGAS YSSITSIFDY 300 DNNGVIKGNI DISDNCFNMG ILENCSMTNE VQIPFSGNNP SSIYLDYSRF HQF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 133 | KRKLSAKPRRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM921067 | 0.0 | HM921067.1 Solanum lycopersicum BRANCHED2b gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010320783.1 | 0.0 | transcription factor TCP12-like | ||||
TrEMBL | A0A3Q7GFQ1 | 0.0 | A0A3Q7GFQ1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g009900.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2436 | 23 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 4e-32 | TCP domain protein 12 |