 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim05g009640.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
bHLH |
| Protein Properties |
Length: 235aa MW: 26587.5 Da PI: 8.2706 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim05g009640.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 35.2 | 2.2e-11 | 83 | 127 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
h +Er+RR+ri + f L +l+P + K++Ka+iLe A I++L
Sopim05g009640.0.1 83 HLLAERKRRKRISKLFVSLASLIPGL-----NKMDKASILEGAATLIRQL 127
7789*********************8.....6****************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 235 aa
Download sequence Send
to blast |
MDDLALIFSH HNNGESSRKQ LHKEKEDEKA NSLACIISFN NNFENSLSIP KDEANNTISF 60
SNINNIIGAK FGERRSGEQA LEHLLAERKR RKRISKLFVS LASLIPGLNK MDKASILEGA 120
ATLIRQLGER AKEDDHHQST IGMMTKNNLL PEVEIKSLEK ELLITILLYK NQQKRNIDEI 180
LSVIQRLHLT IKTTNFMPFG TTSMHITVIA QMNDEFCETT DFLAEKLRSL ISKV*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
