PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g009350.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 833aa    MW: 91021.8 Da    PI: 6.8097
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g009350.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-06530550525
                         --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                         +C+ +a  G+C++G++C F+H
  Sopim05g009350.0.1 530 PCDKYASHGFCNRGSSCLFSH 550
                         7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.596471498IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6472496IPR000571Zinc finger, CCCH-type
SMARTSM003560.012472497IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.756500527IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027500526IPR000571Zinc finger, CCCH-type
SMARTSM003560.093528552IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4530550IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.249530553IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MENSQIGALK PLQNLYPLPP RRRLLMSKTY STLLQILSDC RSTDSTTDKQ KLDDNDSSKL  60
GKENEVGKSV DHHLIRSENL LGTGPAHNEC NNLVEQQGSG DRNEGNSRYG YGDFTRARMQ  120
VDSDLSNHTS NAVEGDRGDF ITNDIIDTNG LVHKTLGCNY QMVKEPGNRC STHETEVKEP  180
DLIRPVELDK DSSIDDVSAA IESCFGADAI ADISQPAEFS GEKMDVSETH LSEEMKHGLR  240
VKEVELETLI SSAGAAESSV HVPMGEEMEE GEAFGDFMVF DESDYDILKR IGNEKKDGAD  300
ESPADISGRE EFAFDVHVDA PQRKDAYASS SIDAVDEDNT FVGGEFIRKF SEEPQDNVEK  360
VFHSKDVETR KVCVYDTILD SENDAKQVGG DMKFDHPAGS QFDSTSGVNA KKRKHSKVAA  420
ENENIGKKEK KRGPLTKESK ARKKAKQRSK RAEERIKLGV KRLKLPPVVK PKVVKYCRHY  480
LKGRCLEGEA CKFSHDTIPL TKSKPCCHFA RQSCMKGDDC PFDHQLSKYP CDKYASHGFC  540
NRGSSCLFSH EVTTVKTDAV TSPIASNSLV QVNTNGMSHK DVNSTSSSAG LVPRNSTERT  600
VLEHVRKPAA STPKGITFLS HGKSLQGDAR KHEEVGLPSK ANGVDNIQKP NGFMKGASTR  660
TPQGMNFLSF GRAPSAEPSG DTLSGMLNMD YGVDKLQLVD MKAKLGSINQ MSTRTPPGSV  720
PRGVNFLSVD EAVEDRSHPI ECYSASSLIQ RQSAPNTTSS KMPFRQLSSI FPAGQSLIQS  780
AQKCNAEIAS SPKAPFLANT PSSIQKALQS TLAFAAKFDL GVKCGMSNGS RH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1441463RKKAKQRSKRAEERIKLGVKRLK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238929.10.0uncharacterized protein LOC101254691
TrEMBLA0A3Q7GFE40.0A0A3Q7GFE4_SOLLC; Uncharacterized protein
STRINGSolyc05g009350.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77401720