PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g009220.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 791aa    MW: 90245 Da    PI: 6.6684
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g009220.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.00038136175432
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C............ CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.as..........k 32 
                         + n+ E+r+R ++ + f   r+ lP+ ++           
  Sopim05g009220.0.1 136 KTNILEQRYRINVGELFGHVRKKLPWaDPkvvkevvdleL 175
                         45************************54455555555550 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045583.6E-568164IPR007639Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal
PfamPF045573.9E-14167259IPR007638Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2
PfamPF007495.7E-120266571IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
CDDcd008073.81E-138266576No hitNo description
Gene3DG3DSA:3.40.50.6203.2E-38266335IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523744.22E-86266578No hitNo description
TIGRFAMsTIGR004401.5E-189267787IPR004514Glutamine-tRNA synthetase
PRINTSPR009874.6E-7270282IPR000924Glutamyl/glutaminyl-tRNA synthetase
PROSITE patternPS001780273284IPR001412Aminoacyl-tRNA synthetase, class I, conserved site
PRINTSPR009874.6E-7299312IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.90.800.102.6E-43339443No hitNo description
PRINTSPR009874.6E-7444454IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.40.50.6203.2E-38446495IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene3DG3DSA:1.10.1160.103.9E-31496573IPR020061Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain
SuperFamilySSF507155.13E-56574784IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
PfamPF039502.1E-41574765IPR020059Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain
Gene3DG3DSA:2.40.240.101.3E-29582692IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene3DG3DSA:2.40.240.101.3E-28693783IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006425Biological Processglutaminyl-tRNA aminoacylation
GO:0048481Biological Processplant ovule development
GO:0005737Cellular Componentcytoplasm
GO:0004819Molecular Functionglutamine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MVKEDSNVLD LFLKIGLDEK TAKNTLANNK VTTNLTAVIH EAAVTDGCDR AVGNLLYTVA  60
TKFPANALNH RPTLLQYIVS TKIKTPAQLE AAFAFLASTA SENLKVHDFE EACGVGVEVS  120
KDDIERAVSE VFEEKKTNIL EQRYRINVGE LFGHVRKKLP WADPKVVKEV VDLELYKLLG  180
ERTAADNEKP VKKKKEKPAK TEAKAKVEET SAPKQSEEEL NPYLIFPTPE ENFKVHTEVY  240
FSDRPVLRAC NSKELLEKHL KVTGGKVLTR FPPEPNGFLH IGHAKAMFVD FGLAKERGGG  300
CYLRFDDTNP EAEKKEYIDH IKEIVGWMGW EPFKITYTSD YFQDLYELAV ELIRRGHAYV  360
DHQTADEVKE YREKKMNSPW RDRPIEESLR LFDEMKKGMI DEGKATLRMK QDMQNDNFNM  420
YDLIAYRIKF TPHPHAGDKW CIYPSYDYAH CIVDSLENIT HSLCTLEFET RRASYYWLLD  480
ALSLYQPFVW EYSRLNVSNT VMSKRKLNRL VTENWVDGWD DPRLMTLAGL RRRGVTSTAI  540
NAFVRGIGIT RSDSSMIQLS RLEYHIREEL NKTAARTLVV LNPLKVVITN LEAGLVMDLD  600
AKKWPEAPAD DASSFYKVPF SSVVYIERTD FRLKDSKDYY GLAPGKSVLL RYAYPIKCTD  660
VILADDKETV LEIRAEYDPS KTIKPKGVLH WVAEPSPGAD PLKVEVRLFD RLFRSENPAE  720
LDDWLGDLSP ESKVVIQNAY AVPSVSKATL GDRFQFERLG YFAVDKDSTS EKLVFNRTVT  780
LRDNYAKGGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4r3z_C0.0978731798Glutamine--tRNA ligase
4ye6_A0.097878775Glutamine--tRNA ligase
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-108HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755171e-108HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010320758.10.0glutamine--tRNA ligase isoform X1
SwissprotP527800.0SYQ_LUPLU; Glutamine--tRNA ligase
TrEMBLA0A3Q7GEE90.0A0A3Q7GEE9_SOLLC; Uncharacterized protein
STRINGSolyc05g009220.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69741213