PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g008670.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 299aa    MW: 33690 Da    PI: 8.5838
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g008670.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH482e-15217242126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +ktelC+ +++tG C+yG++C+FaHg
  Sopim05g008670.0.1 217 FKTELCNKWQETGACPYGENCQFAHG 242
                         79***********************8 PP
2zf-CCCH17.67e-06255280126
                         --S---SGGGGTS.--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHg 26 
                         ykte Cr  +  G  C+yG rC+F H+
  Sopim05g008670.0.1 255 YKTEVCRMVLN-GdPCPYGHRCHFRHS 280
                         9******9999.55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-19211249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-11213248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.446216244IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-9216243IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-12217242IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-11250283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-8250284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.488254282IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-5254281IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MLFPPAGLLL DDSQPSTETT VTPVLTPRFR QNHSSQLLID QHYQQDLMDR HNRVLSQLLE  60
TEKKTLALRQ ENINLKMVNF NLNNRLSLLL KASSDYGPSS SLGLDNGLRR MHVGVGHEEE  120
TSSDGHSWED VVADRHLSPT SVMDSGRADG VDRVLLPKSI SVRSNGYLKT NHAAGGSRPH  180
NRTKSSSVNT AQRVYVKGGS KKEEEPLELD VYNQGMFKTE LCNKWQETGA CPYGENCQFA  240
HGIEELRPVL RHPRYKTEVC RMVLNGDPCP YGHRCHFRHS LTDKEKLMRS LNSKMRSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-22217280467Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2123040.0AC212304.2 Solanum lycopersicum chromosome 05 clone C05HBa0309L13, complete sequence.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238882.10.0zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F54e-66C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A3Q7GF010.0A0A3Q7GF01_SOLLC; Uncharacterized protein
STRINGSolyc05g008670.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91402228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-63C3H family protein