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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sopim05g007110.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 393aa MW: 44413.7 Da PI: 8.7729 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim05g007110.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 96.3 | 2e-30 | 186 | 245 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+++d++++++tYeg+Hnh+
Sopim05g007110.0.1 186 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVRKQVQRCSKDTSILTTTYEGTHNHP 245
58**************************999****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 393 aa
Download sequence Send
to blast |
MLRKDRAMDS TKKDEDKLNS TKCEIYEAKE ENERLKRMLS KMMNDYKSLE MYFQGILTQK 60 NTKNIIATSN NIHEEKEQVE LVSLSLGRNS STSRELIKKE LLYDDQNKSN KNHSKLLFDG 120 LELGLGCKFT QENSFEGPKK ENINNERRVL IQNYLPSDYC GEEFLQQIPQ KKARVSIRAV 180 CDTITMNDGC QWRKYGQKIA KGNPCPRAYY RCTVSPSCPV RKQVQRCSKD TSILTTTYEG 240 THNHPLPFSA TDMASTTSAA ASMLRCTSTS STSQQFLPNI DQNLHGKINF TNNTSNNNLL 300 LATHNNSPTF YLPKTSISTS QSHPTITLDF TTNSSSTNSS SSNSYSTLCN NIKSEIGPSS 360 YLGRPCYSNQ PYITSKEQSE HDRSVQCRSQ NF*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC194694 | 0.0 | AC194694.1 Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05HBa0058L13, complete sequence. |
GenBank | AC212301 | 0.0 | AC212301.1 Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05HBa0060G21, complete sequence. |
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |